PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00031990-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 446aa    MW: 49665.9 Da    PI: 6.272
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00031990-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.71.3e-0819412346
                      -HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
                      +W++Ia  ++ gRt++++k++w++
  PSME_00031990-RA 19 RWARIATQLP-GRTDNEIKNHWNS 41
                      4*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.251147IPR017930Myb domain
SuperFamilySSF466893.74E-81650IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-111848IPR009057Homeodomain-like
CDDcd001671.85E-51940No hitNo description
PfamPF002491.9E-61942IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MMYSILSIPI TRRLMHSYRW ARIATQLPGR TDNEIKNHWN SCLKKRLKLK HHPSSSTINT  60
KSNVASKSNN TNSLSAAAAH AQDDFTFKSS NSAKSAKQCF DTIPDICRPP YSNTSFNVAT  120
TQENQLCGPA ILELKPEHVQ DQHEDQYYSI PDPTINQQIS YSHLWMQNDT SSHSSENFSS  180
HAAFIYSPTL QAQGLHNHDK TVKPRTCNQL IIESCRTTVP SHETPRSSDY SLVSTGRIAI  240
PALVESESWE EKVENDENNI MIDYSNSSST TNPYSNSTGH CSDHVIDPEP YTTHELGMSI  300
LEDYEALYEN TAHKLFSPLM NSRSQFSAPA IRLPTGQFNH FQADCCKDSL NLRYDINLGA  360
PTYIDINSLH TINQLPQIDG GGGGLGDCSR IPSDANTIPG TIIGGSTGQL QTEFKRGAGH  420
VTVWAHDHLY NINPADPCDL DQIYFS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.32e-11myb domain protein 55